Online resources to accompany the McCrea & Morgan text
Recently published papers of interest
Bardos, D., Guillera-Arroita, G. and Wintle, B.A. (in press) Valid auto-models for spatially autocorrelated occupancy and abundance data, Methods in Ecology and Evolution
Barker, R. J., Schofield, M. R., Wright, J. A., Frantz, A. C., & Stevens, C. (2014). Closed-population capture-recapture modeling of samples drawn one at a time. Biometrics, 70(4), 775-782.
Borchers, D.L., Stevenson, B.C., Kidney, D., Thomas, L.J. and Marques, T.A. (2015). A unifying model for capture-recapture and distance sampling surveys. Journal of the American Statistical Association 110, 195-204.
Borchers, D.L. and Langrock, R. (in press). Double-Observer Line Transect Surveys with Markov-Modulated Poisson Process Models for Overdispersed Animal Availability. Biometrics
Bonner, S.J. and Holmberg, J. (2013) Mark-recapture with multiple, non-invasive marks. Biometrics, 69, 766-775.
Canessa, S., Guillera-Arroita, G., Lahoz-Monfort, J.J., Southwell, D., Amstrong, D., Chades, I., Lacy, R. and Converse, S.J. (in press) When do we need more data? A primer on calculating the value of information for applied ecologists, Methods in Ecology and Evolution
Dennis, E.B., Morgan, B.J.T., Freeman, S.N., Roy, D.B. and Brereton, T. (in press) Dynamic models for longitudinal butterfly data.JABES
Dorazio, R.M. (in press) Bayesian data analysis in population ecology: motivations, methods, and benefits. Population Ecology
Fletcher, D., Lebreton, J.-D., Marescot, L., Schaub, M., Gimenez, O., Dawson, S. and Slooten, E. (2012) Bias in estimation of adult survival and asymptotic growth rate caused by undetected capture heterogeneity. Methods in Ecology and Evolution, 3, 206-216.
Gimenez, O., Blanc, L., Besnard, A. Pradel, R., Doherty Jr, P.F., Marboutin, E. and Choquet, R. (2014) Fitting occupancy models with E-SURGE: hidden-Markov modelling of presence-absence data. Methods in Ecology and Evolution, To appear
Guillera-Arroita, G. and Lahoz-Monfort, J.J. (2012) Designing studies to detect changes in species occupancy: power analysis under imperfect detection, Methods in Ecology and Evolution, 3, 860-869.
Guillera-Arroita, G., Lahoz-Monfort, J.J., Elith, J. (2014) Maxent is not a presence-absence method: a comment on Thibaud et al. Methods in Ecology and Evolution, 5, 1192-1197
Guillera-Arroita, G., Lahoz-Monfort, J.J., MacKenzie, D.I., Wintle, B.A. and McCarthy, M.A. (2014). Ignoring imperfect detection in biological surveys is dangerous: a response to "Fitting and Interpreting Occupancy Models". PLoS ONE, 9(7): e99571
Laake, J.L., Johnson, D.S., Diefenbach, D.R. and Ternent (2014) Hidden Markov model for dependent mark loss and survival estimation. JABES, 19, 524-540.
Lahoz-Monfort, J.J., Guillera-Arroita, G., Hauser, C.E. (2014) From planning to implementation: explaining connections between adaptive management and population models. Frontiers in Ecology and Evolution, 2, 60
Matechou, E., Dennis, E. B., Freeman, S. N., Brereton, T. (2014), Monitoring abundance and phenology in (multivoltine) butterfly species: a novel mixture model. Journal of Applied Ecology, 51, 766-775.
McClintock, B. T., L. L. Bailey, B. P. Dreher, and W. A. Link. (2014) Probit models for capture-recapture data subject to imperfect detection, individual heterogeneity and misidentification. The Annals of Applied Statistics. 8, 2461-2484.
Moya, O., Mansilla, P., Madrazo, S., Igual, J., Rotger, A., Romano, A. and Tavecchia, G. (2015) APHIS: A new software for photo-matching in ecological studies Ecological Informatics, 27, 64-70.
Schofield, M. R., Barker, R. J. (2011) Full Open Population Capture-Recapture Models With Individual Covariates. JABES, 16(2), 253-268.
Schofield, M. R., and Barker, R. J. (2014) Hierarchical modeling of abundance in closed population capture-recapture models under heterogeneity. Environmental and Ecological Statistics, 21(3), 435-451.
Schofield, M. R., Barker, R. J., and Taylor, P. (2013) Modeling individual specific fish length from capture-recapture data using the von Bertalanffy growth curve. Biometrics, 69(4), 1012-1021
Schofield, M.R., Barker, R.J. and MacKenzie, D.I. (2009) Flexible hierarchical mark-recapture modeling for open populations using WinBUGS. Environmental and Ecological Statistics, 16, 369-387
Vale, R.T.R., Fewster, R.M., Carroll, E.L. and Patenaude, N.J. (2014) Maximum likelihood estimation for model Mt,α for capture-recapture data with misidentification. Biometrics, To appear