Analysis of Capture-Recapture Data

Links to Capture-Recapture Software

Program Mark
- a windows-based software application for the analysis of data from marked individuals.

RMark
- a collection of R functions that can be used as an interface to Program Mark for analysis of capture-recapture data

Presence
- estimates patch occupancy rates and related parameters.

M-SURGE
- software designed for fitting multistate capture-recapture models.

E-SURGE
- software designed for fitting multievent models.

U-CARE
- software for diagnostic goodness-of-fit tests.

marked
- R code for mark-recapture analysis.

unmarked
- R code for models for data from unmarked animals.

EstimateN
- R functions for fitting some capture heterogeneity models to estimate population size.

D.J. Cole's Maple code
- Maple code for assessment of parameter redundancy

HetAge
- R code for open-population capture-recapture and stopover duration models; includes age-structure and heterogeneity

CARE
- closed-population capture-recapture models

Density
- software for spatially explicit capture recapture

secr
- R package for spatially explicit capture-recapture

The BUGS project
- flexible software for the Bayesian analysis of complex statistical models using Markov chain Monte Carlo methods.

SCRbook
- spatial capture-recapture R code associated with Royle et al (2013) book.

Other software

If you would like us to add a link to your capture-recapture software, please e-mail R.S.McCrea@kent.ac.uk.